基于池塘模型的鱼类eDNA相对丰度研究*
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1.重庆师范大学 水生态健康与环境安全实验室;2.西华师范大学

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国家自然科学基金项目(面上项目,重点项目,重大项目);四川省科技科技计划资助


Relative abundance of fish eDNA based on a pond model
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1.Chongqing Normal University,Laboratory of Water Ecological Health and Environmental Safety, School of Life Sciences,;2.Chongqing Normal University;3.China West Normal University

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    【目的】研究池塘模型下鱼类环境DNA序列丰度与物种数量的关系。【方法】于2022年9月在特定规格池塘中按比例暂养胭脂鱼(Myxocyprinus asiaticus)、长吻鮠(Leiocassis longirostris)、厚颌鲂(Megalobrama pellegrini)和中华倒刺鲃(Spinibarbus sinensis)10天后,于养殖池中设置15个采样点,以线粒体基因12S基因为标记,通过水样采集、过滤、eDNA提取、PCR扩增、高通量测序及生信分析等一系列标准化分析流程检测上述4种鱼类物种的序列信息。运用Excel软件、Prism及R软件包等进行PCR扩增结果、稀释曲线、物种数量和序列相对丰度的趋势关系分析。【结果】在池塘模型下检测到的胭脂鱼序列丰度最低,为3970条序列,中华倒刺鲃的序列丰度最高,为687,895条序列。四种鱼类的序列丰度和物种数量呈正向趋势。【结论】在池塘模型下,胭脂鱼、长吻鮠、厚颌鲂及中华倒刺鲃的序列丰度和物种数量呈正向趋势,可为后续eDNA技术应用于自然河流系统中的鱼类相对丰度评估提供一定的科学依据。

    Abstract:

    [Purposes]To investigate the relationship between environmental DNA sequence abundance and species number in a pond model. [Methods]In September 2022, Myxocyprinus asiaticus, Leiocassis longirostris, Megalobrama pellegrini and Spinibarbus sinensis were temporarily cultured in a specific size pond. After 10 days, 15 sampling sites were set up in this pond. The sequences abundance of the above four fish species were detected through a series of standardized analytical processes, including water sample collection, filtration, eDNA extraction, PCR amplification, high-throughput sequencing and biosignature analysis using the mitochondrial gene 12S gene as a marker . The PCR amplification results, rarefaction curve, species number and sequence abundance trend were analyzed with the use of Excel software, Prism software and R software package. [Findings]Under the pond model, the sequence abundance of M. asiaticus was the lowest (3970 sequences), and that of S. sinensis was the highest (687,895 sequences). The sequence abundance of the four fish species showed a positive trend with the number of species. [Conclusions]In the pond model, there was a positive trend between the sequence abundance and species number of M. asiaticus, L. longirostris, M. pellegrini and S. sinensis, which could provide a certain scientific basis for the subsequent application of eDNA technology to the assessment of relative abundance of fishes in natural river systems.

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  • 收稿日期:2023-09-28
  • 最后修改日期:2024-02-27
  • 录用日期:2024-04-08
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