基于池塘模型的鱼类eDNA序列相对丰度研究
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国家自然科学基金青年科学基金项目(No.32202939);重庆市自然科学基金面上项目(No.CSTB2022NSCQ-MSX0793);四川省自然科学基金青年科学基金项目(No.2022NSFSC1730)


Relative Abundance of Fish eDNA Sequence Based on a Pond Model
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    摘要:

    为考察池塘模型下鱼类的环境DNA(environmental DNA,eDNA)序列相对丰度与个体数量的关系,于2022年9月在长、宽、深分别为200、100、2 m的池塘中按比例暂养100尾胭脂鱼(Myxocyprinus asiaticus)、800尾长吻鮠(Leiocassis longirostris)、1 000尾厚颌鲂(Megalobrama pellegrini)和2 500尾中华倒刺鲃(Spinibarbus sinensis)10 d后,于该养殖池塘中设置15个采样点,以鱼类线粒体12S rRNA基因为标记,通过水样采集、过滤、eDNA提取、PCR扩增、高通量测序、生物信息学分析等一系列标准化分析流程来探究上述4种鱼类个体数量和eDNA序列相对丰度的关系。结果显示:1) 在池塘模型下检测到胭脂鱼的eDNA序列相对丰度最低,为3 970条;中华倒刺鲃的eDNA序列相对丰度最高,为687 895条。2) 4种鱼类的eDNA序列相对丰度和个体数量呈正向趋势。上述研究结果可为后续将eDNA技术应用于自然河流系统中鱼类种群丰度的评估工作提供科学依据。

    Abstract:

    To investigate the relationship between the relative abundance of fish environmental DNA (eDNA) sequence and number of individual in a pond model. In September 2022, 100 Myxocyprinus asiaticus , 800 Leiocassis longirostris , 1 000 Megalobrama pellegrini and 2 500 Spinibarbus sinensis were temporarily cultured in a pond with dimensions of 200 m in length, 100 m in width, and 2 m in depth. After 10 days, 15 sampling sites were set up in this pond. The relationship between number of individuals of the above four fish species and the relative abundance of eDNA sequences were detected through a series of standardized analytical processes, including water sample collection, filtration, eDNA extraction, PCR amplification, high-throughput sequencing and biosignature analysis using the fish mitochondrial gene 12S gene as a marker. The results showed: 1) The relative abundance of M. asiaticus sequence was the lowest (3 970 sequences), and that of S. sinensis was the highest (687 895 sequences). 2) The relative abundance of eDNA sequence for the four fish species showed a positive trend with the number of species. The findings can provide a scientific basis for the subsequent application of eDNA technology in the assessment of fish population abundance in natural river systems.

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周鑫鑫,张玉凤,李清华,秦强,李英文,沈彦君.基于池塘模型的鱼类eDNA序列相对丰度研究[J].重庆师范大学学报自然科学版,2024,41(5):43-49

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  • 在线发布日期: 2024-12-01